The Torneo Primera B of 2006 was full of expectations, since Centauros Villavicencio were relegated from the Colombian Professional Football league.
| Rk | Team | Pts | |
|---|---|---|---|
| 1 | La Equidad | 93 | Champions |
| 2 | Cortuluá | 79 | |
| 3 | Unión Magdalena | 68 | |
| 4 | Academia FC | 66 | |
| 5 | Valledupar FC | 66 | |
| 6 | Centauros Villavicencio | 64 | |
| 7 | Patriotas FC | 52 | |
| 8 | Deportivo Rionegro | 52 | |
| 9 | Depor F.C. | 51 | |
| 10 | Bajo Cauca FC | 50 | |
| 11 | Barranquilla Fútbol Club | 48 | |
| 12 | Pumas de Casanare | 42 | |
| 13 | Córdoba F.C. | 42 | |
| 14 | Alianza Petrolera | 41 | |
| 15 | Girardot F.C. | 35 | |
| 16 | Expreso Rojo | 33 | |
| 17 | Bogotá F.C. | 32 | |
| 18 | Atletico Bello | 29 |
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